PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009802927.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 301aa    MW: 33846.6 Da    PI: 7.8837
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009802927.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.12.5e-32169225158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     dep++VNaKQyq+Il+RR+ Rakle+++kl +k+rkpylheSRh+hAl+R+Rg+gGrF
  XP_009802927.1 169 DEPIFVNAKQYQAILRRREYRAKLEAQNKL-SKGRKPYLHESRHRHALNRARGPGGRF 225
                     79****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.2E-34167228IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.699168228IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.0E-27170225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-22171193IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860173193IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.2E-22202225IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MQDLLQKDSD HSSVSTAPSI SVRPSWRTSK ESQMQQWLTF PGPQNPEQFG FHFQDQDSSS  60
TQSTGQSCPE VATEGESKIY VKSNMPFQAG YSKSIEKPDE AQSESTLSSH EHDCTYQGNH  120
KQIAYAPFAY SDPYCHGLLA AYGQCSTVYP QMLGPISARV PLPLDYQQDE PIFVNAKQYQ  180
AILRRREYRA KLEAQNKLSK GRKPYLHESR HRHALNRARG PGGRFLNMMK LLESGSPNVT  240
YVLDSPVSNK LQLNRQIMEP KVHHSKNFQE SYSTPTCSGI SNGSNCDDIG QQQPLNYSAF  300
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-20169227260NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009802925.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_009802926.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
SwissprotQ9SYH47e-46NFYA5_ARATH; Nuclear transcription factor Y subunit A-5
TrEMBLM0ZR718e-96M0ZR71_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063582e-95(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.12e-42nuclear factor Y, subunit A5